Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607010950_tgu7 GGAAGGGCTATCCAGAGACTGCTCCACTTGGG(+ATATAT)GATCCATCCCATATCCAGTCACCAAATCCAG NGG 10 8 17 8 24 0 100 5 10
    240607010948_f6ex AGTGTCTGGATTTGGTGACTGGATATGGGATG(+ATATAT)GATCCCCAAGTGGAGCAGTCTCTGGATAGCC NGG 10 8 17 8 24 0 100 5 10
    240607010947_e74c AACAAACAAACAAACAAACATATTATTAGAGG(+ATATAT)GATCCTACCAAGGCCTTCTGGTCAACTCTAC NGG 10 8 17 8 24 0 100 5 10
    240607010945_wrqu CAAGAGTAGAGTTGACCAGAAGGCCTTGGTAG(+ATATAT)GATCCCTCTAATAATATGTTTGTTTGTTTGT NGG 10 8 17 8 24 0 100 5 10
    240607010943_9wdo TACATATGCAGCTAGAGACACAAACTCAGGGG(+ATATAT)GTACCTGTTAGTTCATATTGTTGTTCCTCCT NGG 10 8 17 8 24 0 100 5 10
    240607010942_9dln CCTATAGGAGGAACAACAATATGAACTAACAG(+ATATAT)GTACCCCCTGAGTTTGTGTCTCTAGCTGCAT NGG 10 8 17 8 24 0 100 5 10
    240607010940_c3k4 TGTGTCTGTCTTTGGTGGTTGATTATGGTATG(+ATATAT)GATCCCTGGATGGGACAGTCTCTGCATGGTC NGG 10 8 17 8 24 0 100 5 10
    240607010938_6tag GGAAAGACCATGCAGAGACTGTCCCATCCAGG(+ATATAT)GATCCATACCATAATCAACCACCAAAGACAG NGG 10 8 17 8 24 0 100 5 10
    240607010936_y300 TTTTGGCCCTGTTGATCTCGACTGAATGCCAG(+ATATAT)GTACCAGTCTTCTCTACCTTCCCTGCCAAAG NGG 10 8 17 8 24 0 100 5 10
    240607010935_6kdn TGAGCCTTTGGCAGGGAAGGTAGAGAAGACTG(+ATATAT)GTACCTGGCATTCAGTCGAGATCAACAGGGC NGG 10 8 17 8 24 0 100 5 10