Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606221843_bcd1 CAGGTGGATGTTTGGGTTCTGTTGGTAACTGG(+ATATAT)GTACCTGCAAAAGAGCTTAGGACACTTTGCT NGG 10 8 17 8 24 0 100 5 10
    240606221842_2fg0 TAATGAGCAAAGTGTCCTAAGCTCTTTTGCAG(+ATATAT)GTACCCAGTTACCAACAGAACCCAAACATCC NGG 10 8 17 8 24 0 100 5 10
    240606221840_wsmr TCCAGCATGAGCAGGCTCCCTAGCTGTTGAAG(+ATATAT)GATCCCATGGGTCAGGCACTGACCACCTTGA NGG 10 8 17 8 24 0 100 5 10
    240606221838_q0wo CACCTTCAAGGTGGTCAGTGCCTGACCCATGG(+ATATAT)GATCCTTCAACAGCTAGGGAGCCTGCTCATG NGG 10 8 17 8 24 0 100 5 10
    240606221836_yt5q CTATGATCATATAATAACAACAATGTAGAAGG(+ATATAT)GTACCACACCCTTGCTTGCCATGGCCTCACC NGG 10 8 17 8 24 0 100 5 10
    240606221834_4g0c GAGATGGTGAGGCCATGGCAAGCAAGGGTGTG(+ATATAT)GTACCCTTCTACATTGTTGTTATTATATGAT NGG 10 8 17 8 24 0 100 5 10
    240606221833_ky5y GTTCCACTTAGTCAGGAAGTCTCCAGCCTATG(+ATATAT)GATCCTGTGCCACCCCCTGCCCCCAACGCCC NGG 10 8 17 8 24 0 100 5 10
    240606221831_nkym TGTTTGGGCGTTGGGGGCAGGGGGTGGCACAG(+ATATAT)GATCCATAGGCTGGAGACTTCCTGACTAAGT NGG 10 8 17 8 24 0 100 5 10
    240606221830_lpro TGAGATGAGTCCACCTCATCTGTAGCCTAGAG(+ATATAT)GTACCTCAGTGAGTTGGGAAAGTCAGAGGCC NGG 10 8 17 8 24 0 100 5 10
    240606221829_9qry TAAGTGGCCTCTGACTTTCCCAACTCACTGAG(+ATATAT)GTACCTCTAGGCTACAGATGAGGTGGACTCA NGG 10 8 17 8 24 0 100 5 10