Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606150612_o1hg CTGAGGACATCACGGAAGCCCAGAGATTAGGG(+AAAAAA)GTACCACTGGAGGAGCCTCACTGCAGGAGCC NGG 10 8 17 8 24 0 100 5 10
    240606150610_y732 CTCCAGGCTCCTGCAGTGAGGCTCCTCCAGTG(+AAAAAA)GTACCCCTAATCTCTGGGCTTCCGTGATGTC NGG 10 8 17 8 24 0 100 5 10
    240606150609_l51y ATTGAAGCAGGGATGGCTTGTCATAGCAGTGG(+AAAAAA)GATCCAGCTTCACCTGAGTTACTCTACCAAA NGG 10 8 17 8 24 0 100 5 10
    240606150607_q0r4 CTGTGTTTGGTAGAGTAACTCAGGTGAAGCTG(+AAAAAA)GATCCCACTGCTATGACAAGCCATCCCTGCT NGG 10 8 17 8 24 0 100 5 10
    240606150606_1100 GACAGGAGCGCAGAGGTGAGAGAAAACAACAG(+AAAAAA)GATCCTCCCAAGAAGTCCTTTCCTTAGGCCT NGG 10 8 17 8 24 0 100 5 10
    240606150604_zuqp CACAAAGGCCTAAGGAAAGGACTTCTTGGGAG(+AAAAAA)GATCCTGTTGTTTTCTCTCACCTCTGCGCTC NGG 10 8 17 8 24 0 100 5 10
    240606150603_axap GAGAATCCTGTTAAAATTGTTGGCTGTTACTG(+AAAAAA)GTACCCTATGTTAATCAGCCACCAGGTGTCA NGG 10 8 17 8 24 0 100 5 10
    240606150601_nx3h TGAAATGACACCTGGTGGCTGATTAACATAGG(+AAAAAA)GTACCAGTAACAGCCAACAATTTTAACAGGA NGG 10 8 17 8 24 0 100 5 10
    240606150600_y3rl TGATACAGTCAGCACCAGCAGACCTGCTTCAG(+AAAAAA)GATCCAAGAAAGCTGGCTTTGTAGGCTGTCT NGG 10 8 17 8 24 0 100 5 10
    240606150559_5sa5 ACTGAAGACAGCCTACAAAGCCAGCTTTCTTG(+AAAAAA)GATCCTGAAGCAGGTCTGCTGGTGCTGACTG NGG 10 8 17 8 24 0 100 5 10