Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606144953_1ria CATTTATTTCAGCTCTTTCCTGTTAACACTTG(+AAAAAA)GATCCTGAAGCTTGGTGTCAGGGACTTATCT NGG 10 8 17 8 24 0 100 5 10
    240606144951_94g5 ATCTCCAAGTCTTCTTCCAGAGGATGCATTTG(+AAAAAA)GATCCCAGAGGAGTGTTTTCTGGAAGACAAT NGG 10 8 17 8 24 0 100 5 10
    240606144950_akk0 GAAAGATTGTCTTCCAGAAAACACTCCTCTGG(+AAAAAA)GATCCAAATGCATCCTCTGGAAGAAGACTTG NGG 10 8 17 8 24 0 100 5 10
    240606144948_r9t5 ACCTCATCTCCTAAGATAGATTTTTGTCTTGG(+AAAAAA)GTACCTTATCACTTGTATCTTACTATAAAAG NGG 10 8 17 8 24 0 100 5 10
    240606144947_qwur CTTCACTTTTATAGTAAGATACAAGTGATAAG(+AAAAAA)GTACCCAAGACAAAAATCTATCTTAGGAGAT NGG 10 8 17 8 24 0 100 5 10
    240606144945_nf1s GTTTTGTAGGTCAATTCCTATTTTGTGGGTGG(+AAAAAA)GATCCCCTTTTCATTAGTCTGACATTCAGAT NGG 10 8 17 8 24 0 100 5 10
    240606144943_b30i TCCCAATCTGAATGTCAGACTAATGAAAAGGG(+AAAAAA)GATCCCACCCACAAAATAGGAATTGACCTAC NGG 10 8 17 8 24 0 100 5 10
    240606144942_xhcc GGATGACACTCCCCGAAAGGGAGAGGGAAATG(+AAAAAA)GTACCAGCGGAAGGCAGATTCTCAGACCTTC NGG 10 8 17 8 24 0 100 5 10
    240606144940_2zjw AAAGAGAAGGTCTGAGAATCTGCCTTCCGCTG(+AAAAAA)GTACCATTTCCCTCTCCCTTTCGGGGAGTGT NGG 10 8 17 8 24 0 100 5 10
    240606144938_w4mb CTTCTTCCTTCTTTTTGTGAACAAATCAATAG(+AAAAAA)GATCCTTTTTACTGTCAGACTTTCCCCTTGA NGG 10 8 17 8 24 0 100 5 10