Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606120011_ngxs ATTGTTGGGTTGGCTGGGACCTGCTCTGAAGG(+AAAAAA)GATCCCTCAGTTCACCGATTGGCAAGCCAAG NGG 10 8 17 8 24 0 100 5 10
    240606120010_h8eh GAAAGTTTTTAAGCCACCAGCTGAGATGAGAG(+AAAAAA)GTACCTTTAAGCCTAGCCCACCATCACATCG NGG 10 8 17 8 24 0 100 5 10
    240606120009_10dz CTCACCGATGTGATGGTGGGCTAGGCTTAAAG(+AAAAAA)GTACCTCTCATCTCAGCTGGTGGCTTAAAAA NGG 10 8 17 8 24 0 100 5 10
    240606120007_rmep CCTCAGGGTTAGTAAGGCAGGAGCTGCTAGTG(+AAAAAA)GTACCACAGGAACAGCAATGGCTGACATTAA NGG 10 8 17 8 24 0 100 5 10
    240606120006_xdn4 TGAAGTTAATGTCAGCCATTGCTGTTCCTGTG(+AAAAAA)GTACCACTAGCAGCTCCTGCCTTACTAACCC NGG 10 8 17 8 24 0 100 5 10
    240606120004_vb1e GAGGTGGGGTGCTTTATAGGATTCTGCCTTCG(+AAAAAA)GATCCAAAACTCTGACCAGGGTGGCTGCTCC NGG 10 8 17 8 24 0 100 5 10
    240606120002_m66b GAGATGGAGCAGCCACCCTGGTCAGAGTTTTG(+AAAAAA)GATCCGAAGGCAGAATCCTATAAAGCACCCC NGG 10 8 17 8 24 0 100 5 10
    240606120000_6nj7 CATCTCTATAACCGTTTGCTCTTGGACTCCCG(+AAAAAA)GATCCCTGTACCCCAGGTTGTTTTCCCTGTA NGG 10 8 17 8 24 0 100 5 10
    240606115959_6dta CAGGTTACAGGGAAAACAACCTGGGGTACAGG(+AAAAAA)GATCCGGGAGTCCAAGAGCAAACGGTTATAG NGG 10 8 17 8 24 0 100 5 10
    240606115956_8ion CATCTCTATAACCGTTTGCTCTTGGACTCCCG(+AAAAAA)GATCCCTGTACCCCAGGTTGTTTTCCCTGTA NGG 10 8 17 8 24 0 100 5 10