Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613171401_3opz AACAGCCGTGGGCGGTGGGTGTTGTTACTGTG(+AGGACA)GTACCTACCATGCCATCTTAACCGAAACCAA NGG 10 8 17 8 24 0 100 5 10
    240613171400_u65n AGGTCTTGGTTTCGGTTAAGATGGCATGGTAG(+AGGACA)GTACCACAGTAACAACACCCACCGCCCACGG NGG 10 8 17 8 24 0 100 5 10
    240613171358_59oj AGGTCTACTTTGGGTCATTATTTCACCTCAGG(+AGGACA)GATCCATCTCTCTGCCTTATGCTCCAGTTTT NGG 10 8 17 8 24 0 100 5 10
    240613171357_euuz CTTGAAAAACTGGAGCATAAGGCAGAGAGATG(+AGGACA)GATCCCTGAGGTGAAATAATGACCCAAAGTA NGG 10 8 17 8 24 0 100 5 10
    240613171355_dtfn CCACCTGAGCCATATGCTGACCTCTTTGCCAG(+AGGACA)GATCCTCCATGCTGCTGTCCAGTAGGGCCCA NGG 10 8 17 8 24 0 100 5 10
    240613171353_kjpo GGACATGGGCCCTACTGGACAGCAGCATGGAG(+AGGACA)GATCCTGGCAAAGAGGTCAGCATATGGCTCA NGG 10 8 17 8 24 0 100 5 10
    240613171351_jx0v CTGCGCACCCCGCCGCCAAGCCCCAGCTCCAG(+AGGACA)GTACCTACCGCGGTGCGCCTCTCCCGCCGGG NGG 10 8 17 8 24 0 100 5 10
    240613171350_9m2l CGGGGCCCGGCGGGAGAGGCGCACCGCGGTAG(+AGGACA)GTACCTGGAGCTGGGGCTTGGCGGCGGGGTG NGG 10 8 17 8 24 0 100 5 10
    240613171347_cga0 GATCCCTGATTCCGAGTCTGGGATTTCCCAGG(+AGGACA)GATCCTGGATGAGCTCAAGACACCCCGGGAA NGG 10 8 17 8 24 0 100 5 10
    240613171345_0un6 GTCTTTTCCCGGGGTGTCTTGAGCTCATCCAG(+AGGACA)GATCCCTGGGAAATCCCAGACTCGGAATCAG NGG 10 8 17 8 24 0 100 5 10