Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605002101_88r3 TATACAATTGGCGGTAGCAATAGAGCTGTGAG(+ACTCAC)GTACCCTGGAATTGGAATCGATTTGTAATTG NGG 10 8 17 8 24 0 100 5 10
    240605002100_rsz9 TAAAACACAGTAAACCCCCAAATTTAAAACAG(+ACTCAC)GATCCCCATCTTATTCTCAAGACTAATTTTC NGG 10 8 17 8 24 0 100 5 10
    240605002058_z8lg CGGTAGAAAATTAGTCTTGAGAATAAGATGGG(+ACTCAC)GATCCTGTTTTAAATTTGGGGGTTTACTGTG NGG 10 8 17 8 24 0 100 5 10
    240605002057_022k GAGCACAAACAGTCTGAAGGACAGAAGAACAG(+ACTCAC)GATCCCATCACTGGGAAGTGTCACATAACAA NGG 10 8 17 8 24 0 100 5 10
    240605002055_fylj GCCCCTTGTTATGTGACACTTCCCAGTGATGG(+ACTCAC)GATCCTGTTCTTCTGTCCTTCAGACTGTTTG NGG 10 8 17 8 24 0 100 5 10
    240605002054_gatg TGGATATGAGCAGGTATCTCCTTTTTAACGTG(+ACTCAC)GTACCTTATTAATCACTTTGCTGTATCGCAT NGG 10 8 17 8 24 0 100 5 10
    240605002053_1ni5 AGGTAATGCGATACAGCAAAGTGATTAATAAG(+ACTCAC)GTACCACGTTAAAAAGGAGATACCTGCTCAT NGG 10 8 17 8 24 0 100 5 10
    240605002050_njqm TTGTTTGGGTTTGTTCTAGGTATGGTCCCAGG(+ACTCAC)GATCCCAGATCAAACCAGGCCCCTGGGCCTA NGG 10 8 17 8 24 0 100 5 10
    240605002049_3eki TAGGATAGGCCCAGGGGCCTGGTTTGATCTGG(+ACTCAC)GATCCCTGGGACCATACCTAGAACAAACCCA NGG 10 8 17 8 24 0 100 5 10
    240605002048_e4om ATGGGAAGATAATCTTAGAGCTACTGTTTATG(+ACTCAC)GATCCAGTGTGAGTTGTTGGTGTGGAGGAGT NGG 10 8 17 8 24 0 100 5 10