Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604204303_gmpv GAGGGAAGGAAAATTACAGGGGGCTTTAAAAG(+ACTCAC)GTACCAGTTACCTAGCAGCTGGGCAATTAGA NGG 10 8 17 8 24 0 100 5 10
    240604204302_gpnz ATGAAAATGCCAAAATTAATCCCTTTTAGTTG(+ACTCAC)GATCCTATTCTATGTTGACCTTTTGTAATCA NGG 10 8 17 8 24 0 100 5 10
    240604204301_1udq GTTATTGATTACAAAAGGTCAACATAGAATAG(+ACTCAC)GATCCAACTAAAAGGGATTAATTTTGGCATT NGG 10 8 17 8 24 0 100 5 10
    240604204259_ojtg AGACCAAGTTTCTCACTAACCAGGTACAAAAG(+ACTCAC)GATCCAACCAACGTATGAGTTACGGTGTTTG NGG 10 8 17 8 24 0 100 5 10
    240604204258_6qyz AGAAACAAACACCGTAACTCATACGTTGGTTG(+ACTCAC)GATCCTTTTGTACCTGGTTAGTGAGAAACTT NGG 10 8 17 8 24 0 100 5 10
    240604204257_luk5 TTCTATTAAAACCTGTCCCTGGTACTATCATG(+ACTCAC)GTACCAAGCTGTGTAAAACACTGCACTGAAT NGG 10 8 17 8 24 0 100 5 10
    240604204255_cyeg AACAAATTCAGTGCAGTGTTTTACACAGCTTG(+ACTCAC)GTACCATGATAGTACCAGGGACAGGTTTTAA NGG 10 8 17 8 24 0 100 5 10
    240604204253_d9ka AGGGGTTACCAGTATTCGTTGCTCTTGCAGAG(+ACTCAC)GATCCAGGTTTGCTCCTAGCACTCACACAGT NGG 10 8 17 8 24 0 100 5 10
    240604204251_h5e1 GAGCTACTGTGTGAGTGCTAGGAGCAAACCTG(+ACTCAC)GATCCTCTGCAAGAGCAACGAATACTGGTAA NGG 10 8 17 8 24 0 100 5 10
    240604204250_csvu TACAGTTGTGCAACTAAGTCTGGTTGTGCCTG(+ACTCAC)GATCCAACTGCTACCAGCATTAAAAACACTT NGG 10 8 17 8 24 0 100 5 10