Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613134508_p2ib ACATCTACATTAGGTGACTTCAACTCCAGGGG(+AGGACA)GATCCAATGCTTTCTTCCATGGGCACCTGGA NGG 10 8 17 8 24 0 100 5 10
    240613134506_sihf AAAAGACCCCAGAAGCACGTGGGTGAGGCCTG(+AGGACA)GATCCAGGCACCTGTGGGAGGTGAGCCTCCT NGG 10 8 17 8 24 0 100 5 10
    240613134504_425c ACATGAGGAGGCTCACCTCCCACAGGTGCCTG(+AGGACA)GATCCAGGCCTCACCCACGTGCTTCTGGGGT NGG 10 8 17 8 24 0 100 5 10
    240613134501_9vrp TGGTCAAGCTCAGCAGCCCCTGGGTCCCCTTG(+AGGACA)GTACCAGTCAAAGGTGGAGCAATCCCGAACT NGG 10 8 17 8 24 0 100 5 10
    240613134500_nv2f CCCAAAGTTCGGGATTGCTCCACCTTTGACTG(+AGGACA)GTACCAAGGGGACCCAGGGGCTGCTGAGCTT NGG 10 8 17 8 24 0 100 5 10
    240613134458_l0gc GGCCACCCCAACAGATGGGCTCCCTTCTATGG(+AGGACA)GATCCCCAAAGGGCAGGTCCTGGCCGCTGGA NGG 10 8 17 8 24 0 100 5 10
    240613134456_p49g AGCTGTCCAGCGGCCAGGACCTGCCCTTTGGG(+AGGACA)GATCCCATAGAAGGGAGCCCATCTGTTGGGG NGG 10 8 17 8 24 0 100 5 10
    240613134454_c7n6 ATGCCATGGCTGCACTGGACACAGGAGAAGGG(+AGGACA)GTACCAGTCACTGACGCCAGGCTGCTGTGCC NGG 10 8 17 8 24 0 100 5 10
    240613134453_5snu AGGGTGGCACAGCAGCCTGGCGTCAGTGACTG(+AGGACA)GTACCCCTTCTCCTGTGTCCAGTGCAGCCAT NGG 10 8 17 8 24 0 100 5 10
    240613134451_xhpp ACAAGAAAGCCGCTCTCGTCTGCAGGACACGG(+AGGACA)GATCCTGCGTGGCTCACAGCGGCAGCTGCCA NGG 10 8 17 8 24 0 100 5 10