Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613125950_6r71 AATTCTATTTTATGAGGGAGTTACTTTGTAAG(+AGGACA)GATCCTGTCATTTTTCTGTACCCAAGGATTG NGG 10 8 17 8 24 0 100 5 10
    240613125949_qm43 AGGTTCAATCCTTGGGTACAGAAAAATGACAG(+AGGACA)GATCCTTACAAAGTAACTCCCTCATAAAATA NGG 10 8 17 8 24 0 100 5 10
    240613125948_owrp AGACCTGCATATGGGGAGGTAACATTGTTGAG(+AGGACA)GATCCCACTCTGGCATTCATGTTGTCGTAAA NGG 10 8 17 8 24 0 100 5 10
    240613125946_poda CTTACTTTACGACAACATGAATGCCAGAGTGG(+AGGACA)GATCCTCAACAATGTTACCTCCCCATATGCA NGG 10 8 17 8 24 0 100 5 10
    240613125944_tb3b CACTTGAGTAGAGATGCCCTGGGAGGCCAGGG(+AGGACA)GATCCCAAGGCCCCATCAGAATCTTGTTTTT NGG 10 8 17 8 24 0 100 5 10
    240613125941_l2o0 AAACAAAAAACAAGATTCTGATGGGGCCTTGG(+AGGACA)GATCCCCTGGCCTCCCAGGGCATCTCTACTC NGG 10 8 17 8 24 0 100 5 10
    240613125939_2be6 TCACCTTCCCTTCTGAATCCGTTGGGGCTGGG(+AGGACA)GTACCACCTGGATTAAGACATTTAAAATCTT NGG 10 8 17 8 24 0 100 5 10
    240613125938_m8at ATTCCAAGATTTTAAATGTCTTAATCCAGGTG(+AGGACA)GTACCCCAGCCCCAACGGATTCAGAAGGGAA NGG 10 8 17 8 24 0 100 5 10
    240613125936_y5dc TTAGGGGAAGAGACAAACTGTTCTGTACACTG(+AGGACA)GTACCTTCTGAGTCCTGAACATTCTGGAAAC NGG 10 8 17 8 24 0 100 5 10
    240613125935_sqkv AAAATGTTTCCAGAATGTTCAGGACTCAGAAG(+AGGACA)GTACCAGTGTACAGAACAGTTTGTCTCTTCC NGG 10 8 17 8 24 0 100 5 10