Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613123141_hodl CTACAAGTTGCTAGGATATATCAGTCATAAGG(+AGGACA)GATCCTGAAGAATACCAGAGAGCTTTTCAAT NGG 10 8 17 8 24 0 100 5 10
    240613123140_vjar TAGAAATTGAAAAGCTCTCTGGTATTCTTCAG(+AGGACA)GATCCCTTATGACTGATATATCCTAGCAACT NGG 10 8 17 8 24 0 100 5 10
    240613123139_9wfw GTTAGTAAATAAGATGAGGTTAGCACTTTTAG(+AGGACA)GTACCAGTTGTCCTGAGTAACTGTACTCCAA NGG 10 8 17 8 24 0 100 5 10
    240613123138_895m CTCTGTTGGAGTACAGTTACTCAGGACAACTG(+AGGACA)GTACCTAAAAGTGCTAACCTCATCTTATTTA NGG 10 8 17 8 24 0 100 5 10
    240613123135_2alj AAGTAATCGGGAGCCTTTGATTTGGCAGCCGG(+AGGACA)GTACCCTGGTGCTTTACAGTAGCACATGGCC NGG 10 8 17 8 24 0 100 5 10
    240613123133_qog2 GGAGGGGCCATGTGCTACTGTAAAGCACCAGG(+AGGACA)GTACCCGGCTGCCAAATCAAAGGCTCCCGAT NGG 10 8 17 8 24 0 100 5 10
    240613123131_8nbl GCACTGCAGAAAGCATCTGAAAATCGTCCTTG(+AGGACA)GATCCCATGTGAGTGGTGGCACCACTAAGTC NGG 10 8 17 8 24 0 100 5 10
    240613123130_8607 GCAGAGACTTAGTGGTGCCACCACTCACATGG(+AGGACA)GATCCAAGGACGATTTTCAGATGCTTTCTGC NGG 10 8 17 8 24 0 100 5 10
    240613123128_sgf9 GTCAAGTTCACCATGTGCTTAAATAACAGATG(+AGGACA)GATCCTAGGCTAGAGGGTTTTCTCCTCAGCA NGG 10 8 17 8 24 0 100 5 10
    240613123127_e45m AGCTTTGCTGAGGAGAAAACCCTCTAGCCTAG(+AGGACA)GATCCATCTGTTATTTAAGCACATGGTGAAC NGG 10 8 17 8 24 0 100 5 10