Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607041033_bh9z AAGCAGCTTTGTTGCTGCCTTTATGGACATGG(+ATATAT)GTACCAATTGCTTTTTGTAATATGGTAAAAA NGG 10 8 17 8 24 0 100 5 10
    240607041032_xrj1 TCACATTTTTACCATATTACAAAAAGCAATTG(+ATATAT)GTACCCATGTCCATAAAGGCAGCAACAAAGC NGG 10 8 17 8 24 0 100 5 10
    240607041031_vnat GGGTAGAATCCTTCCAGAAGCCATGCTTTCAG(+ATATAT)GATCCACTGTGATTGTCCAGCAGGGCTAGCT NGG 10 8 17 8 24 0 100 5 10
    240607041030_cca5 TCATGAGCTAGCCCTGCTGGACAATCACAGTG(+ATATAT)GATCCTGAAAGCATGGCTTCTGGAAGGATTC NGG 10 8 17 8 24 0 100 5 10
    240607041028_b2eh TCCTCCACCAAGTACAATACATAGTATCTCAG(+ATATAT)GATCCAGTGACACCTATACATCTTGGTCCCT NGG 10 8 17 8 24 0 100 5 10
    240607041027_xwgn GGGACAGGGACCAAGATGTATAGGTGTCACTG(+ATATAT)GATCCTGAGATACTATGTATTGTACTTGGTG NGG 10 8 17 8 24 0 100 5 10
    240607041026_4ucn GGTCCAAAGACTTGAGGGACTGTGTACTCAAG(+ATATAT)GTACCAGGAATGGCTACGTCAGAACCCTGTT NGG 10 8 17 8 24 0 100 5 10
    240607041024_36d6 TACAAAACAGGGTTCTGACGTAGCCATTCCTG(+ATATAT)GTACCTTGAGTACACAGTCCCTCAAGTCTTT NGG 10 8 17 8 24 0 100 5 10
    240607041022_0ni8 CTACCCTCATGCCCCCTTTGCCTTTCCCTCGG(+ATATAT)GATCCTGTTTGGGCTCCCTTTCCCCAAGCAA NGG 10 8 17 8 24 0 100 5 10
    240607041021_9g4l AACACTTGCTTGGGGAAAGGGAGCCCAAACAG(+ATATAT)GATCCCGAGGGAAAGGCAAAGGGGGCATGAG NGG 10 8 17 8 24 0 100 5 10