Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607002419_su02 ATGGAGGTAGGGGCGGTCAGATGAGGTGGGTG(+ATATAT)GTACCCAGGGGCACATCCTTGGCTCTGCCCC NGG 10 8 17 8 24 0 100 5 10
    240607002418_8r95 TGTAGGTCCCCTGCCCTATGTTCTGAAGAATG(+ATATAT)GATCCTAAACTCATGTGGCCTCTGATATTTA NGG 10 8 17 8 24 0 100 5 10
    240607002417_8k7i TCTTGTAAATATCAGAGGCCACATGAGTTTAG(+ATATAT)GATCCATTCTTCAGAACATAGGGCAGGGGAC NGG 10 8 17 8 24 0 100 5 10
    240607002415_mzsf CATCCCTAGAGGCCCAGAATGGGGGTTGCTGG(+ATATAT)GTACCCCATGCCCTGAGGGTTCCAGCACTGC NGG 10 8 17 8 24 0 100 5 10
    240607002413_t2ft TGGCAGCAGTGCTGGAACCCTCAGGGCATGGG(+ATATAT)GTACCCAGCAACCCCCATTCTGGGCCTCTAG NGG 10 8 17 8 24 0 100 5 10
    240607002410_kn5w ATCAGTATCCAGAAGCAGAGTGGTTGCCCCAG(+ATATAT)GATCCCACCTCACGTGTGATGCTACCCAGCA NGG 10 8 17 8 24 0 100 5 10
    240607002408_fj0s AGGAGTGCTGGGTAGCATCACACGTGAGGTGG(+ATATAT)GATCCTGGGGCAACCACTCTGCTTCTGGATA NGG 10 8 17 8 24 0 100 5 10
    240607002407_lec3 ATGCCCAGGAAAAATCCAGATCTCCATAGCTG(+ATATAT)GATCCTGGGTGGCTGGCTGGCGCAGGCATCT NGG 10 8 17 8 24 0 100 5 10
    240607002404_9idi GCCATAGATGCCTGCGCCAGCCAGCCACCCAG(+ATATAT)GATCCAGCTATGGAGATCTGGATTTTTCCTG NGG 10 8 17 8 24 0 100 5 10
    240607002402_epb0 GGGAATCTGGTCCCTCCTTGTGAGTTCCTGAG(+ATATAT)GATCCAACTCAGTTAGGCTTGGTAGCGAGGG NGG 10 8 17 8 24 0 100 5 10