Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607002500_mi8c AGACTCAGGAAAGAGGTACTTGGGGTCTGTGG(+ATATAT)GTACCCAGATATATCTAAAAATACATAGACA NGG 10 8 17 8 24 0 100 5 10
    240607002459_fhv2 CCAGCTGTCTATGTATTTTTAGATATATCTGG(+ATATAT)GTACCCACAGACCCCAAGTACCTCTTTCCTG NGG 10 8 17 8 24 0 100 5 10
    240607002458_480x TCAACTGACTACGTAGCTGACCTAGAGCTTTG(+ATATAT)GATCCTCCACCTCCACTTCCCCAGTGCTGGC NGG 10 8 17 8 24 0 100 5 10
    240607002456_aary TACAGGCCAGCACTGGGGAAGTGGAGGTGGAG(+ATATAT)GATCCAAAGCTCTAGGTCAGCTACGTAGTCA NGG 10 8 17 8 24 0 100 5 10
    240607002455_hr78 CACCATTTGAGGCACAAAATCCAAACTTACAG(+ATATAT)GATCCGATATTATGTTGATCTGACAGTTTCT NGG 10 8 17 8 24 0 100 5 10
    240607002454_qlqo AGCCCAGAAACTGTCAGATCAACATAATATCG(+ATATAT)GATCCTGTAAGTTTGGATTTTGTGCCTCAAA NGG 10 8 17 8 24 0 100 5 10
    240607002453_3j2z TGCTAAGCAGAATCAGGCTGTAGGAAGGCATG(+ATATAT)GATCCTGGGGCAGGAACTGCACAGCCAAGGC NGG 10 8 17 8 24 0 100 5 10
    240607002450_znw9 TCAGGGCCTTGGCTGTGCAGTTCCTGCCCCAG(+ATATAT)GATCCATGCCTTCCTACAGCCTGATTCTGCT NGG 10 8 17 8 24 0 100 5 10
    240607002448_dvu6 GACGTTGATGGATGACTTTTCCTTCATCCATG(+ATATAT)GATCCCAAGAGTGGTGCAGTCCGCCAGGAGA NGG 10 8 17 8 24 0 100 5 10
    240607002446_vdr2 GCGGTTCTCCTGGCGGACTGCACCACTCTTGG(+ATATAT)GATCCATGGATGAAGGAAAAGTCATCCATCA NGG 10 8 17 8 24 0 100 5 10