Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606140126_b5lz GTTTAATTCAGTGCTACGGAGACAGGCAAGTG(+AAAAAA)GATCCCTGGGGTTCACTGGCCAGTTAGCTGA NGG 10 8 17 8 24 0 100 5 10
    240606140123_y6z1 TAGGCTCAGCTAACTGGCCAGTGAACCCCAGG(+AAAAAA)GATCCACTTGCCTGTCTCCGTAGCACTGAAT NGG 10 8 17 8 24 0 100 5 10
    240606140122_cdok CCACAACTGCGTAACACATAGTACTAAGAGAG(+AAAAAA)GTACCAGGGACTGCACTTGTATGACACTCAG NGG 10 8 17 8 24 0 100 5 10
    240606140120_42xc CAGTCCTGAGTGTCATACAAGTGCAGTCCCTG(+AAAAAA)GTACCTCTCTTAGTACTATGTGTTACGCAGT NGG 10 8 17 8 24 0 100 5 10
    240606140118_njyg TCTTTTTATTTATTAATTTTCAAAATGAGTTG(+AAAAAA)GTACCCTGACTATGCCCTTAGGTAGGTGTAC NGG 10 8 17 8 24 0 100 5 10
    240606140117_wtfp TTACTGTACACCTACCTAAGGGCATAGTCAGG(+AAAAAA)GTACCAACTCATTTTGAAAATTAATAAATAA NGG 10 8 17 8 24 0 100 5 10
    240606140114_4z7p TGCCTTGGAGCTACTGATCTGGCCAGCCATGG(+AAAAAA)GATCCTCCTCTAGGACAACTAGGCCATTGCC NGG 10 8 17 8 24 0 100 5 10
    240606140113_ytcm TAGGGGGCAATGGCCTAGTTGTCCTAGAGGAG(+AAAAAA)GATCCCATGGCTGGCCAGATCAGTAGCTCCA NGG 10 8 17 8 24 0 100 5 10
    240606140111_3kx7 CAGTATCCACGGTGGGTACTGAGGAAGGGGTG(+AAAAAA)GTACCCACCTCAGATGGGAGTTGAGACCATT NGG 10 8 17 8 24 0 100 5 10
    240606140109_73vk GTTGCAATGGTCTCAACTCCCATCTGAGGTGG(+AAAAAA)GTACCACCCCTTCCTCAGTACCCACCGTGGA NGG 10 8 17 8 24 0 100 5 10