Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605161927_cb1f TCTGTTTAGAGATGGAGTGGGGAGTGGCATAG(+CAGTGT)GATCCCAGCACCAAGAGCTCTCCTCTGCACC NGG 10 8 17 8 24 0 100 5 10
    240605161925_mppv AAGTATAAACCTCGATTTTCCTGGGCAGACTG(+CAGTGT)GATCCTATGATCAACCTAGGAATAGGGATTA NGG 10 8 17 8 24 0 100 5 10
    240605161924_v1ip CAGTTTAATCCCTATTCCTAGGTTGATCATAG(+CAGTGT)GATCCAGTCTGCCCAGGAAAATCGAGGTTTA NGG 10 8 17 8 24 0 100 5 10
    240605161922_9nwq TTTTATATCAGTGTGTTGAATTTTGACTTTAG(+CAGTGT)GTACCTGGAAATGTAATATCCTTGCTATAAA NGG 10 8 17 8 24 0 100 5 10
    240605161921_djsb CATGTTTTATAGCAAGGATATTACATTTCCAG(+CAGTGT)GTACCTAAAGTCAAAATTCAACACACTGATA NGG 10 8 17 8 24 0 100 5 10
    240605161919_tr4o AGTCCTTACAAGGATGGAGTGCGTGCAAAATG(+CAGTGT)GTACCTTACTGTTTCTAGAACAGCCTTCTGC NGG 10 8 17 8 24 0 100 5 10
    240605161918_rpg7 GAAGAGCAGAAGGCTGTTCTAGAAACAGTAAG(+CAGTGT)GTACCATTTTGCACGCACTCCATCCTTGTAA NGG 10 8 17 8 24 0 100 5 10
    240605161917_eoox ATAAACTAGAAAACATAGATGCACAGGACTCG(+CAGTGT)GATCCATGATATTTACACTGGGAAATGTTCT NGG 10 8 17 8 24 0 100 5 10
    240605161915_zpx2 CATTTAGAACATTTCCCAGTGTAAATATCATG(+CAGTGT)GATCCGAGTCCTGTGCATCTATGTTTTCTAG NGG 10 8 17 8 24 0 100 5 10
    240605161914_t1lj ACGATAAGCAATGGTCAGACTTTCCTTCTGTG(+CAGTGT)GATCCTTATGCCAATTCAGCTACTAATCGGT NGG 10 8 17 8 24 0 100 5 10